Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs71219103 chr7:62005348 C/T 8.29E-7 366 22.75 20.23 11.27 KM Plot
CRC rs71544907 chr6:161803407 CT/C 1.83E-7 371 22.4 19.88 8.73 KM Plot
CRC rs71547530 chr7:158135503 A/G 2.93E-6 357 22.07 25.13 14.87 KM Plot
CRC rs71550843 chr7:62035196 C/T 9.15E-7 365 23.83 19.73 11.27 KM Plot
CRC rs71550844 chr7:62035201 A/G 9.15E-7 365 23.83 19.73 11.27 KM Plot
CRC rs71565839 chr7:57844409 C/CAAGA 2.14E-5 360 23.37 20.38 11.27 KM Plot
CRC rs71565865 chr7:62031529 GAT/G 7.3E-7 359 22.67 19.87 11.27 KM Plot
CRC rs71565868 chr7:62081005 CACAA/C 6.59E-7 369 24.2 20.23 11.27 KM Plot
CRC rs7170743 chr15:67126339 T/G 5.69E-5 364 24.07 18.53 16.37 KM Plot
CRC rs71865328 chr1:74845019 GCA/G 0 366 0.82 23.12 22.32 KM Plot
CRC rs7247842 chr19:42083673 T/C 3.04E-7 365 23.1 19.6 13.35 KM Plot
CRC rs72484044 chr5:40872769 TGTGAGC/T 1.26E-5 373 22.35 21.75 25.83 KM Plot
CRC rs72749508 chr5:40872332 G/A 3.84E-5 374 22.35 21.75 26.1 KM Plot
CRC rs72749562 chr5:40954302 G/A 4.38E-12 370 22.25 24.97 5.98 KM Plot
CRC rs7293636 chr7:62325162 G/A 4.32E-5 365 12.37 20.38 24.72 KM Plot